MARCO is required for TLR2- and NOD2-mediated resonses to Streptococcus pneumoniae and clearance of pneumococcal colonization in the murine nasopharnyx. 2013. Dorrington et al. J. Immunol.

Click image for .pdf of paper.

Dorrington JI

Despite having multiple vaccines against Streptococcus pneumoniae available today, over a million people die each year due to pneumococcal infections. Mike Dorrington, a Ph.D. candidate in the Bowdish lab, is attempting to understand how to produce better vaccines by gaining a better grasp on how the immune system fights these bacteria. Mike has recently published a manuscript entitled “MARCO is required for TLR2- and NOD2-mediated responses to Streptococcus pneumoniae and clearance of pneumococcal colonization in the murine nasopharynx” in the Journal of Immunology. Mike’s work focuses on the importance of macrophage scavenger receptors in immune protection against S. pneumoniae, the most common cause of bacterial pneumonia. This manuscript provides us with evidence that Macrophage Receptor with Collagenous structure (MARCO), a class A scavenger receptor, plays an integral role in establishing and maintaining the appropriate innate immune response to the bacteria in its preferred niche, the nasal passage.

     S. pneumoniae is a very common pathogen that causes fatal disease in children under the age of 5 (where it often causes meningitis) and adults over the age of 65 (where it most often presents in pneumonia). Before infectious disease occurs, bacteria colonize the nasal passages of individuals where they replicate. If the bacteria are able to persist for long enough, they will then move to the lungs, blood, or meninges and cause potentially life-threatening disease. It has previously been shown that the clearance of the bacteria from the nasal passages was dependent on an influx of macrophages to the site. These cells are able to internalize and kill the bacteria efficiently. MARCO is expressed by these active macrophages and has been shown to play a role in the recognition of the bacteria.

Mike’s work shows that mice who lack MARCO expression are unable to clear bacterial colonization in a timely fashion. This is due to a decrease in a number of innate immune functions. First, MARCO-deficient mice have significantly less recruitment of innate immune cells such as neutrophils and macrophages to the site of colonization. Without these cells, the bacteria are free to thrive and replicate in the nasal passage, increasing the chance that they will travel to further tissues and cause disease. MARCO-deficient mice also present with less inflammation than they’re wild-type counterparts, as seen by a paucity of pro-inflammatory cytokines and chemokines including, surprisingly, type I interferons (cytokines associated with antiviral immunity). These data are supported by experiments performed in vitro using macrophage populations from MARCO-deficient and wild-type mice. When these cells are stimulated with S. pneumoniae, the MARCO-deficient macrophages produce less cytokines and chemokines. These cells are also less able to internalize the bacteria, a key step in the destruction of the pathogens.

A potentially ground-breaking finding that comes from Mike’s work is that MARCO is able to modulate the activity of other important innate immune receptors. Mike has shown that NF-kB activation in S. pneumoniae-stimulated cells expressing MARCO along with TLR2 and its co-receptor CD14 is much higher than cells not expressing MARCO. This is also true of cells expressing MARCO as well as NOD2 when compared to those expressing just NOD2. As NF-kB is a central regulator of immune function, this represents a very important step in our understanding of antibacterial innate immune responses in the nose.

Mike’s work on MARCO will continue as he attempts to uncover the mechanism by which MARCO increases NF-kB activation by these other receptors. It is his hope to be able to apply these advances in the basic science to vaccine development in order to generate an effective strain-independent vaccine against S. pneumoniae infection.

“The Evolution of the Class A Scavenger Receptors” 2012. Whelan et al. BMC Evol Biol

Whelan et al. BMC Evolutionary Biology 2012, 12:227 http://www.biomedcentral.com/1471-2148/12/227

The scavenger receptors are an evolutionarily ancient family of proteins required for host defence and homeostasis but teasing apart their function and even their structure has been challenging. The goal of this manuscript was to use evolution as a guide to discover how the class A scavenger receptor family was formed and to identify regions of conservation and hence probable functional importance for future study. Phagocytic receptors such as the class A scavenger receptors are integral members of the innate immune response, which is conserved in all classes of life and after reproduction and nutrient acquisition is probably the major most fundamental requirement for survival.

There are essentially only four basic mechanisms of the innate immune system – agglutination (e.g. lectins), lysis/neutralization (e.g complement, antimicrobial peptides), phagocytosis (e.g. scavenger receptors), and pro-inflammatory signalling (e.g. the toll like receptors). The fact that these processes are ancient and have been so strongly preserved is a testament to their importance. Of these, phagocytosis is likely the most ancient process and was probably adapted from its original purpose of nutrient ingestion . One might hypothesize that phagocytosis was truly the genesis of the immune system since our single celled ancestors had to distinguish  between “self” and “non-self” in order to distinguish between food and their own daughter cells.  From there phagocytosis became essential to fundamental processes such as embryonic development, pathogen recognition, and homeostatic clearance of senescent cells. Without phagocytosis, the transition to more complicated life forms could not have occurred.

Although there have been excellent evolutionary analyses of the lectins, toll like receptors and complement pathways, very little is known about the evolution of the phagocytic receptors. The class A scavenger receptors are an excellent example of these multifunctional receptors as they are involved in both host defence and homestasis. Since the phagocytic receptors in general and the scavenger receptors in particular are a diverse group of proteins,it has been challenging to understand how members within a group are related. Indeed, the first goal of this manuscript was to definitively demonstrate that the members of the class A scavenger receptors, which had been grouped together based on a ragtag combination of ligand binding and some degree of amino acid similarity, were actually a family at all.  Since we were able to trace a probable path of gene duplication and consequent functionalization, we are confident that the 5 members (SRAI/II, MARCO, SCARA3/4/5) are actually related.  Interestingly the class A scavenger receptors may have acquired their long stalk like form with a single scavenger receptor cysteine rich domain (SRCR) around the time of the evolution of fish since, although SRCR domain can be found in invertebrates and single celled organisms, we could not find anything that resembled a modern class A scavenger receptor in any genomes of evolutionarily more ancient organisms such as jellyfish, lampreys and insects.

Because elucidating the function of the specific domains of the scavenger receptors has been so challenging (even the function of the SRCR domain is unclear), ultimately we want to use evolution as a guide to which domains are functionally important (i.e. conserved). In this regard we found that there is a common conserved region in the collagenous domain, which in the type member SRAI, is believed to be the ligand binding domain. In addition conserved domains were identified in the cytoplasmic tail and the coiled-coiled domain. Future experiments will be performed to determine if these domains are necessary for structure, expression, cellular localization or phagocytic function.

 

PhD candidates Alicja Puchta and Mike Dorrington win at the 2013 FHS Research Plenary

Congratulations to both Alicja Puchta and Mike Dorrington for winning at the 2013 FHS research Plenary! Mike was the recipient of the Best Poster Presented by a Doctoral Candidate award. Alicja was the recipient of an Outstanding Achievement Award, which recognizes graduate students in their final year of a Master’s or Doctoral program who have made outstanding achievements, based on the opinion of their graduate program.  This award can be given to a maximum of 10-15% of all students in the final year of a Master’s or Doctoral program affiliated with the Faculty of Health Sciences.

Congratulations and keep up the awesome work!

“Blood CD33+HLA-DR- myeloid-derived suppressor cells are increased with age and a history of cancer” 2013. Verschoor et al. JLB

MDSCs (myeloid derived suppressor cells) are a recently discovered and very heterogenous cell type that appear to directly suppress T cell responses and their presence in the tumour or the circulation is an extremely poor prognostic marker.

The Bowdish lab recently dipped our foot into the confusing world of MDSCs because we were curious to know whether their frequency increases with age and if so, could this explain why age is a risk factor for many cancers. They do increase with age and this may explain why some adaptive immune responses decline with age. One thing we were very surprised to find is that individuals who had any history of cancer but were believed to be in remission had higher levels of these cells in circulation. This begs the question – did these people have higher levels and to begin with and is this why they were predisposed to cancer? Or do they still have subclinical tumours that promote the development of MDSCs? Or does the suppressive environment of the cancer microenvironment stay with you for life? More studies (not by us, that was enough) are warranted.

For the .pdf click here

For the supplementary data, click here.

Bowdish Lab Hosts Future Female Scientists (Canadian Association of Girls in Science).

On Thursday March 7th, the Bowdish Lab welcomed a group of five to twelve year old girls for a night for a night of science fun! In association with The Canadian Association for Girls In Science (CAGIS), the Bowdish lab opened its doors to promote and encourage our future young scientists.

CAGIS is an award winning national science club for girls aged 7-16, the purpose of which is to promote, educate and support interest and confidence in science, technology, engineering and mathematics among girls. Needless to say, The Bowdish Lab jumped at an opportunity to inspire such an eager group.

The night began with an introductory presentation by Dr. Bowdish which introduced theDawn gives out cards girls to basic concepts of immunology, good and bad germs and the members of the Bowdish Lab. Dr. Bowdish proposed a challenge to the girls; to encourage scientific inquiry, whoever asks the greatest number of scientific questions by the end of the night will win a prize! Every time a student asked a question, they would receive an official Dr. Dawn Bowdish business card to keep track. Dr. Bowdish nearly ran out of business cards IMG_0796 - Copybefore the end of the presentation!

 

The girls were then split into groups of two to three to take part in a variety of hands-on scientific activities. Of course, if the girls wanted to participate in awesome science activities, they need the proper scientific attire.

 

 

 

 

 

Girl & microscope

 

Members of the Bowdish lab organized five stations to help explain what we do as scientists. . Mike Dorrington introduced the girls to using a microscope to analyze anything from blood to nasal wash samples. Mike showed the girls how we separate blood into different components in order to isolate white blood cells. The girls were then able to observe the various types of white blood cells using pre-prepared slides. Bowdish lab organized five stations to help explain what we do as

 

Alicja & student

Alicja Puchta demonstrated how scientists develop special film to analyze anything from X-ray results to protein analysis. The girls were taken into a totally different world – the dark room. Special red lights allow for scientists to avoid exposing sensitive film to normal light. The girls were able to expose film to a variety of objects such as CD’s and pens and develop the film for their own take-home souvenir!

Avee Naidoo and Keith Lee introduced the concepts of acid and base chemistry using aColoured bubbles red-cabbage based pH indicator. The girls were allowed to use common household products to visualize changes in pH. Acids like vinegar turned the purple solution a bright neon pink, whereas bases such as baking soda turned the solution to blue and green. The grand finale was to add a piece of dry ice into a (green) basic solution. What would happen? The dry ice was able to turn the solution a variety of colors from green to blue to purple to pink in an eye catching manner.

Kyle Novakowski explained the concepts of dry ice and how we as scientists rely on it to send samples around the world while keeping them very cold. Students were shown what happens when dry ice is added to warm water and the process of sublimation. The resulting CO2 gas was then bubbled through a soapy solution to make spooky “boo bubbles” which the girls were able to hold in their very own hands. The girls were very excited to pop the bubbles and witness the escaping gas.

C02 is fun

Although the girls did not wish to be whisked away from the exciting applic

Pretty plates

ation s of dry ice, Dr. Preethi Jayanth was able to maintain the same level of fun at her stations. Our future scientist guests were able to observe various types of agar used to grow

After a few hours of exciting science, our champion question-asker was awarded a prize during a wrap-up Q&A session with Dr. Bowdish and the lab members. The immense amount of positive feedback and enthusiasm made for a wonderful night that we hope to experience again soon.bacteria. While peach and chocolate agar may sound appetizing – nobody would want to eat this stuff! The girls were given the opportunity to detect microbes on their own hands before and after washing! Two to three days later, the girls were sent pictures of all the bacteria on their hands which had grown on the agar.

Scientists plus girls excited about science

Bowdish Lab Cleans Up at the 53rd Annual Bay Area Science and Engineering Fair (BASEF)!

On Thursday May 21st, Bowdish Lab members were not only working hard as judges at the 53rd Annual BASEF fair, but also actively participating in presenting our research. Our high school students Jason Fan, winner of the IIDR summer studentship in 2012, and Leonard Rivet, a high school co-op student, both created fantastic posters and engaged judges in discussing their projects. Jason Fan (Right) received a Gold Merit Award and $100 for his poster entitled “Saving the World — One Ligand at a Time:  Novel Streptococcus pneumoniae Ligands for Macrophage Receptors”. Leonard Rivet (Left) received a Silver Merit Award and $80 for his poster entitled “Expression and Post-Translational Trimerization of MARCO in E.coli”.

Bowdish lab members Leonard Rivet & Jason Fan present their award winning posters at BASEF 2013.

Bowdish lab members Leonard Rivet & Jason Fan present their award winning posters at BASEF 2013.

Jason went on to win a silver award at the Canada wide Science Fair and to be accepted to McMaster’s prestigious Bachelor of Health Sciences program.

Congratulations to both our fantastic young scientists!

 

Bowdish Lab Attends 53rd Annual BASEF Science Fair

Dr. Bowdish and members of the lab attended the 53rd annual Bay Area Science and Engineering Fair (BASEF) as merit and special award judges on Thursday March 21st. All members of the lab were blown away by the sheer volume of young scientists and the incredible effort these students put into their projects. Bowdish Lab members judged projects focused on Health & Life sciences. Dr. Bowdish and Dr.Mossman judged for the IIDR Summer studentship, a 6-week summer internship in the IIDR, which is one of the most sought after prizes at the science fair.vWe are all looking forward to the 54th BASEF fair.

 

Eisha Ahmed (Abbey Park High School, Oakville) presents her award winning poster "Ara h Proteins, Peanuts, and Parasites". Eisha was the winner of the IIDR summer studentship and will be back at McMaster learning bioinformatics this summer.

Eisha Ahmed (Abbey Park High School, Oakville) presents her award winning poster “Ara h Proteins, Peanuts, and Parasites”. Eisha was the winner of the IIDR summer studentship and will be back at McMaster learning bioinformatics this summer.

 

Sarah Wu won second place for the IIDR summer studentship for her very impressive project developing a novel diagnostic for malaria.

Sarah Wu won second place for the IIDR summer studentship for her very impressive project developing a novel diagnostic for malaria.

 

Looking for an example of a teaching dossier or a candidate’s statement for tenure & promotion? See Dawn’s here.

I spoke at a post-doctoral fellow career day and there was a session on creating a teaching dossier. I am currently working on mine for tenure & promotion so if you’re curious here is my…

Candiate’s Statement

Teaching Philosophy & Dossier

…and here’s the documents that McMaster has prepared on preparing a teaching dossier and the formatting they prefer.

As a note, this is formatted in the way recommended by the Dept of Pathology & Molecular Medicine at McMaster. Other institutes & departments will have other stylistic preferences, if you’re able get an example from your department. I haven’t included my teaching tables (basically a summary of student ratings and attendance of my courses). They are not particularly interesting but if there is interest I am happy to post them.

Don’t be shy  – I’m a big fan of crowdsourcing so tell me what you think & what can be improved. Also, this is a teaching example of me as an assistant professor, I am happy to share my documents I created when I was applying for positions, just email & ask.

Changing of the undergraduate guards.

The changing of the guards (or at least undergrads) happened this summer in the Bowdish Lab. We wish our departing undergraduates Keith Lee (onwards to medical school), Samanthy Balachandran (onwards to graduate school) and Peter Mu (radical that he is – onward to getting a job!) all the best in their future endeavors!
The Bowdish Lab is excited to welcome our new undergraduate students Prasant Bharadwaj, a MITACS summer student from India, James Han, an iSci student, and Dessi Loukouv, a co-op student working collaboratively with Qu Biologics. Netusha Thevaranjan will be staying on as a summer/thesis student.
Peter Mu, Samanthy Balachandran and Keith Lee - the 2012/13 crop of undergrads as they move on to their next adventure.

Peter Mu, Samanthy Balachandran and Keith Lee – the 2012/13 crop of undergrads as they move on to their next adventure.

Nothing says "Thanks for all the hard work" like carrot cake.

Nothing says “Thanks for all the hard work” like carrot cake.